PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001101-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 299aa    MW: 33089.1 Da    PI: 10.1017
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001101-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v+++G+g W tI r          R+  ++k++w++
  AHYPO_001101-RA  5 KQKWTSEEEAALKAGVRKHGSGKWQTILRDPEfsnvlRSRSNVDLKDKWRN 55
                     79************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.431161IPR017930Myb domain
SuperFamilySSF466892.02E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-13456IPR009057Homeodomain-like
SMARTSM007171.6E-7459IPR001005SANT/Myb domain
PfamPF002492.0E-8555IPR001005SANT/Myb domain
CDDcd116601.11E-18657No hitNo description
PROSITE profilePS5150423.216118189IPR005818Linker histone H1/H5, domain H15
SMARTSM005269.4E-14119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.01E-15119197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-14119188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.4E-8127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV RKHGSGKWQT ILRDPEFSNV LRSRSNVDLK DKWRNINVTL  60
SGLGSREKAR LALKRNPQIP KHEDKLSLVN KVTITNDEKD VQAEPVVPPS EAVQVTNSKK  120
TYTRLENHIL EAITTLKEPK GSDRIAIAMY IEDRYLAPPN FSKLLASKLK FMTLNGQLLK  180
VKRRYKISIS SPLSETRINS PSDGKHKGLL MPERKDLKIF TMSEVVADLE KMKSLSPHEA  240
AAAAARAVAE AEAAIAEAEK AAREAEVAET EAEAAQAFAE AAIKALKCQK LCAWIQYH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684267.11e-122PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK48e-71TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0J8C1F71e-122A0A0J8C1F7_BETVU; Uncharacterized protein
STRINGVIT_03s0091g01030.t011e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-71telomere repeat binding factor 1